Variant report

Variant	rs2154076
Chromosome Location	chr9:95923091-95923092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95921846..95923192-chr9:96065668..96067944,24	MCF-7	breast:
2	chr9:95920898..95923528-chr9:96327939..96330398,2	MCF-7	breast:
3	chr9:95922407..95924638-chr9:96036435..96038460,2	MCF-7	breast:
4	chr9:95922249..95924729-chr9:95929251..95932279,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2154078	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2185972	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3934851	1.00[ASW][hapmap]
rs4744182	0.86[ASN][1000 genomes]
rs4744183	0.85[ASN][1000 genomes]
rs6479464	1.00[ASW][hapmap]
rs7028251	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95913400-95929000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:95919000-95925000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:95922000-95923200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:95922000-95923200	Enhancers	Brain Substantia Nigra	brain
6	chr9:95922000-95923200	Enhancers	Colon Smooth Muscle	Colon
7	chr9:95922000-95925400	Enhancers	Fetal Brain Male	brain
8	chr9:95922000-95925400	Enhancers	Fetal Stomach	stomach
9	chr9:95922200-95923200	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:95922200-95925600	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:95922200-95925600	Enhancers	Fetal Muscle Leg	muscle
12	chr9:95922400-95923400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:95922400-95923800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:95922400-95924000	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:95922400-95924200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:95922400-95924200	Weak transcription	Brain Anterior Caudate	brain
17	chr9:95922400-95930600	Weak transcription	Right Ventricle	heart
18	chr9:95922600-95923400	Weak transcription	Fetal Brain Female	brain
19	chr9:95922600-95923600	Weak transcription	Fetal Lung	lung
20	chr9:95922600-95923600	Enhancers	Stomach Smooth Muscle	stomach
21	chr9:95922600-95924200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:95922600-95925200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:95922800-95923200	Enhancers	HepG2	liver
24	chr9:95922800-95924000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:95922800-95924000	Weak transcription	Fetal Heart	heart
26	chr9:95922800-95925600	Enhancers	Brain Germinal Matrix	brain
27	chr9:95923000-95923400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:95923000-95923800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:95923000-95930600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links