Variant report

Variant	rs7028251
Chromosome Location	chr9:95921852-95921853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95920870..95922510-chr9:96212285..96214912,3	K562	blood:
2	chr9:95915284..95918114-chr9:95920887..95922388,2	K562	blood:
3	chr9:95921846..95923192-chr9:96065668..96067944,24	MCF-7	breast:
4	chr9:95920870..95922450-chr9:96212942..96214912,2	K562	blood:
5	chr9:95920898..95923528-chr9:96327939..96330398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2154076	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2154078	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2185972	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95899800-95922200	Weak transcription	Gastric	stomach
2	chr9:95907200-95922200	Weak transcription	Pancreas	Pancrea
3	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
4	chr9:95909400-95922000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:95913400-95929000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:95918200-95922000	Weak transcription	Fetal Lung	lung
7	chr9:95918200-95922000	Weak transcription	K562	blood
8	chr9:95918800-95922000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:95918800-95922000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:95918800-95922000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:95919000-95922000	Weak transcription	Brain Anterior Caudate	brain
12	chr9:95919000-95922000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:95919000-95922000	Weak transcription	Brain Substantia Nigra	brain
14	chr9:95919000-95922000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:95919000-95922200	Weak transcription	Brain Germinal Matrix	brain
16	chr9:95919000-95922200	Weak transcription	Fetal Brain Female	brain
17	chr9:95919000-95922200	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:95919000-95925000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:95919200-95922000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:95919200-95922000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:95919200-95922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:95919200-95922200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:95919400-95922000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr9:95919400-95922000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:95919400-95922000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:95919800-95922000	Weak transcription	Fetal Brain Male	brain
27	chr9:95919800-95922000	Weak transcription	GM12878-XiMat	blood
28	chr9:95920800-95922000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr9:95921200-95922600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:95921800-95922000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:95921800-95922000	Enhancers	A549	lung
32	chr9:95921800-95922000	Enhancers	Hela-S3	cervix
33	chr9:95921800-95922400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:95921800-95922400	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr9:95921800-95922400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:95921800-95922400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:95921800-95922600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:95921800-95922600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr9:95921800-95922600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:95921800-95922600	Enhancers	NH-A	brain
41	chr9:95921800-95922800	Flanking Active TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links