Variant report

Variant	rs2156549
Chromosome Location	chr18:40413915-40413916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs475820	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs538445	0.94[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.92[MKK][hapmap];0.88[ASN][1000 genomes]
rs553243	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs588304	0.84[JPT][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs618236	0.83[CHB][hapmap];0.91[CHD][hapmap]
rs633940	0.85[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs639529	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs656617	0.85[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs686074	0.90[EUR][1000 genomes]
rs866972	0.84[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9960040	0.92[CEU][hapmap];0.89[GIH][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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