Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2156549	0.84[CEU][hapmap]
rs2642799	0.95[YRI][hapmap]
rs476407	0.85[YRI][hapmap]
rs485404	0.85[YRI][hapmap]
rs529072	0.85[YRI][hapmap]
rs529621	0.95[YRI][hapmap]
rs553243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs556211	0.85[YRI][hapmap]
rs556394	0.94[YRI][hapmap]
rs588304	0.94[EUR][1000 genomes]
rs597269	0.94[YRI][hapmap]
rs606919	0.84[YRI][hapmap]
rs617272	0.85[YRI][hapmap]
rs633351	0.85[YRI][hapmap]
rs633940	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs643286	0.85[YRI][hapmap]
rs656617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs686074	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs866972	0.96[EUR][1000 genomes]
rs9960040	0.92[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40436600-40443600	Weak transcription	Fetal Intestine Large	intestine

Quick Search: