Variant report

Variant	rs2642799
Chromosome Location	chr18:40391610-40391611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11082297	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11872616	0.87[ASN][1000 genomes]
rs11873248	0.88[ASN][1000 genomes]
rs11876135	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11877954	0.87[CEU][hapmap]
rs12457018	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1626483	0.87[ASN][1000 genomes]
rs1835500	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1943169	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1943171	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1943177	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1943178	0.90[ASN][1000 genomes]
rs1943179	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs28447520	0.89[ASN][1000 genomes]
rs28780768	0.86[ASN][1000 genomes]
rs476407	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs485404	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs488182	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs529072	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs529621	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs556211	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs556394	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs559216	0.88[ASN][1000 genomes]
rs587697	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs589041	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs594272	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs597269	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs604330	0.89[ASN][1000 genomes]
rs604565	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs606128	0.87[ASN][1000 genomes]
rs606919	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs60827299	0.88[ASN][1000 genomes]
rs615294	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs615912	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs617272	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs621000	0.89[ASN][1000 genomes]
rs622364	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs633351	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.88[ASN][1000 genomes]
rs635930	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs639529	0.95[YRI][hapmap]
rs643286	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap]
rs646328	0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6507502	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs656617	0.95[YRI][hapmap]
rs679462	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7228468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7235419	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7238151	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7238693	0.90[ASN][1000 genomes]
rs7239233	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7241720	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7242948	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs729581	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs8084670	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs8090510	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs8096856	0.95[CEU][hapmap]
rs8098030	0.90[ASN][1000 genomes]
rs8098429	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs8099760	0.90[ASN][1000 genomes]
rs9304287	0.95[CEU][hapmap]
rs9946696	0.90[ASN][1000 genomes]
rs9947110	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9947132	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9953581	0.87[ASN][1000 genomes]
rs9954085	0.90[CEU][hapmap]
rs9960040	0.89[YRI][hapmap]
rs9961268	0.88[ASN][1000 genomes]
rs9967226	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40388000-40396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40389400-40396200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr18:40389400-40396200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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