Variant report
| Variant | rs11877954 |
|---|---|
| Chromosome Location | chr18:40470391-40470392 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:40470184..40470769-chr18:40528826..40529795,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11082299 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs11082300 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs11875160 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs16976807 | 1.00[CHB][hapmap] |
| rs16976960 | 0.82[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs2642799 | 0.87[CEU][hapmap] |
| rs8096856 | 0.90[CEU][hapmap];1.00[CHB][hapmap] |
| rs9304287 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs9954085 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap] |
| rs9954468 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs9955033 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs9960917 | 1.00[CHB][hapmap] |
| rs9964120 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056794 | chr18:40197837-40688514 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv2269 | chr18:40430930-40475718 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv909574 | chr18:40440609-40488279 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv909575 | chr18:40440609-40493500 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv470418 | chr18:40466757-40493501 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv576765 | chr18:40466757-40545122 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
