Variant report

Variant	rs9954085
Chromosome Location	chr18:40466757-40466758
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11082299	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11082300	1.00[CHB][hapmap];0.82[CHD][hapmap];0.88[ASN][1000 genomes]
rs11875160	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11877954	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs16976807	1.00[CHB][hapmap]
rs16976960	0.88[ASN][1000 genomes]
rs1943169	0.81[CEU][hapmap]
rs2642799	0.90[CEU][hapmap]
rs556394	0.81[CEU][hapmap]
rs588304	0.82[CEU][hapmap]
rs597269	0.81[CEU][hapmap]
rs8096856	0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap]
rs9304287	0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap]
rs9954468	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9955033	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9960917	1.00[CHB][hapmap]
rs9964120	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470418	chr18:40466757-40493501	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv576765	chr18:40466757-40545122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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