Variant report

Variant	rs16976807
Chromosome Location	chr18:40351023-40351024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11082297	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs11082299	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11082300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11872616	0.83[EUR][1000 genomes]
rs11873248	0.81[EUR][1000 genomes]
rs11875160	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11876135	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs11877954	1.00[CHB][hapmap]
rs12457018	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1626483	0.84[EUR][1000 genomes]
rs16976960	0.91[CEU][hapmap];0.82[ASN][1000 genomes]
rs1835500	0.82[CEU][hapmap]
rs1943171	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1943177	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs1943179	0.83[CEU][hapmap]
rs28447520	0.83[EUR][1000 genomes]
rs476407	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs485404	0.84[EUR][1000 genomes]
rs488182	0.84[CEU][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs529072	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs529621	0.84[CEU][hapmap]
rs556211	0.84[CEU][hapmap]
rs559216	0.83[EUR][1000 genomes]
rs587697	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs589041	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs594272	0.84[CEU][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs604330	0.84[EUR][1000 genomes]
rs606128	0.83[EUR][1000 genomes]
rs606919	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs60827299	0.81[EUR][1000 genomes]
rs615912	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs617272	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs621000	0.84[EUR][1000 genomes]
rs633351	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs635930	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs643286	0.84[CEU][hapmap]
rs6507502	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs679462	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7228468	0.84[CEU][hapmap]
rs7235419	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7238151	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7238693	0.83[EUR][1000 genomes]
rs7239233	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7241720	0.84[CEU][hapmap]
rs7242948	0.84[CEU][hapmap]
rs729581	0.84[CEU][hapmap]
rs8084670	0.91[CEU][hapmap];0.80[TSI][hapmap]
rs8096856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8098030	0.83[EUR][1000 genomes]
rs8098429	0.83[CEU][hapmap]
rs9304287	1.00[CHB][hapmap]
rs9947110	0.84[CEU][hapmap]
rs9947132	0.84[CEU][hapmap]
rs9953581	0.83[EUR][1000 genomes]
rs9954085	1.00[CHB][hapmap]
rs9954468	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9955033	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9960917	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9961268	0.84[EUR][1000 genomes]
rs9964120	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs9967226	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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