Variant report

Variant	rs9964120
Chromosome Location	chr18:40439885-40439886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11082297	0.81[CEU][hapmap]
rs11082299	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11082300	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11875160	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11877954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12457018	0.81[CEU][hapmap]
rs16976807	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs16976960	0.93[CEU][hapmap];0.82[CHB][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1943171	0.81[CEU][hapmap]
rs1943177	0.81[EUR][1000 genomes]
rs1943178	0.81[EUR][1000 genomes]
rs1943179	0.81[EUR][1000 genomes]
rs633351	0.81[CEU][hapmap]
rs7228468	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs7235419	0.81[CEU][hapmap]
rs7242948	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs8096856	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9304287	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs9946696	0.82[EUR][1000 genomes]
rs9947110	0.82[EUR][1000 genomes]
rs9947132	0.82[EUR][1000 genomes]
rs9954085	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9954468	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9955033	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9960917	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9967226	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40436600-40443600	Weak transcription	Fetal Intestine Large	intestine

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