Variant report

Variant	rs16976960
Chromosome Location	chr18:40396003-40396004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11082297	0.86[CEU][hapmap]
rs11082299	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11082300	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11875160	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876135	0.85[CEU][hapmap]
rs11877954	0.82[CHB][hapmap]
rs12457018	0.86[CEU][hapmap]
rs16976807	0.91[CEU][hapmap]
rs1943171	0.86[CEU][hapmap]
rs1943177	0.83[EUR][1000 genomes]
rs1943178	0.83[EUR][1000 genomes]
rs1943179	0.83[EUR][1000 genomes]
rs633351	0.86[CEU][hapmap]
rs7228468	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7235419	0.86[CEU][hapmap]
rs7242948	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs8084670	0.84[CEU][hapmap]
rs8096856	0.81[YRI][hapmap]
rs9304287	0.81[YRI][hapmap]
rs9946696	0.83[EUR][1000 genomes]
rs9947110	0.83[EUR][1000 genomes]
rs9947132	0.83[EUR][1000 genomes]
rs9954468	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9955033	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9960917	0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9964120	0.93[CEU][hapmap];0.82[CHB][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9967226	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40388000-40396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40389400-40396200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr18:40389400-40396200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:40395400-40396400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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