Variant report
| Variant | rs9304287 |
|---|---|
| Chromosome Location | chr18:40421022-40421023 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:77492971..77494576-chr18:40419914..40422764,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11082299 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs11082300 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs11875160 | 1.00[CHB][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes] |
| rs11877954 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs16976807 | 1.00[CHB][hapmap] |
| rs16976960 | 0.81[YRI][hapmap];0.91[ASN][1000 genomes] |
| rs1943169 | 0.86[CEU][hapmap] |
| rs2642799 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs556394 | 0.86[CEU][hapmap] |
| rs597269 | 0.86[CEU][hapmap] |
| rs604565 | 0.85[EUR][1000 genomes] |
| rs8096856 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap] |
| rs9954085 | 0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap] |
| rs9954468 | 1.00[CHB][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes] |
| rs9955033 | 1.00[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs9960917 | 1.00[CHB][hapmap] |
| rs9964120 | 1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056794 | chr18:40197837-40688514 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
