Variant report

Variant	rs9960917
Chromosome Location	chr18:40360908-40360909
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11082297	0.88[EUR][1000 genomes]
rs11082299	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11082300	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11872616	0.86[EUR][1000 genomes]
rs11873248	0.84[EUR][1000 genomes]
rs11875160	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11876135	0.86[EUR][1000 genomes]
rs11877954	1.00[CHB][hapmap]
rs12457018	0.86[EUR][1000 genomes]
rs1626483	0.87[EUR][1000 genomes]
rs16976807	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16976960	0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1943171	0.89[EUR][1000 genomes]
rs1943177	0.81[EUR][1000 genomes]
rs1943178	0.81[EUR][1000 genomes]
rs1943179	0.81[EUR][1000 genomes]
rs28447520	0.86[EUR][1000 genomes]
rs476407	0.87[EUR][1000 genomes]
rs485404	0.87[EUR][1000 genomes]
rs488182	0.87[EUR][1000 genomes]
rs529072	0.84[EUR][1000 genomes]
rs559216	0.84[EUR][1000 genomes]
rs587697	0.85[EUR][1000 genomes]
rs589041	0.85[EUR][1000 genomes]
rs594272	0.87[EUR][1000 genomes]
rs604330	0.87[EUR][1000 genomes]
rs606128	0.86[EUR][1000 genomes]
rs60827299	0.84[EUR][1000 genomes]
rs615912	0.84[EUR][1000 genomes]
rs617272	0.84[EUR][1000 genomes]
rs621000	0.87[EUR][1000 genomes]
rs633351	0.87[EUR][1000 genomes]
rs635930	0.84[EUR][1000 genomes]
rs6507502	0.87[EUR][1000 genomes]
rs679462	0.84[EUR][1000 genomes]
rs7235419	0.89[EUR][1000 genomes]
rs7238151	0.86[EUR][1000 genomes]
rs7238693	0.86[EUR][1000 genomes]
rs7239233	0.86[EUR][1000 genomes]
rs72903088	0.82[ASN][1000 genomes]
rs8096856	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs8098030	0.87[EUR][1000 genomes]
rs8098429	0.83[EUR][1000 genomes]
rs8099760	0.81[EUR][1000 genomes]
rs9304287	1.00[CHB][hapmap]
rs9946696	0.82[EUR][1000 genomes]
rs9947110	0.82[EUR][1000 genomes]
rs9947132	0.82[EUR][1000 genomes]
rs9953581	0.87[EUR][1000 genomes]
rs9954085	1.00[CHB][hapmap]
rs9954468	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9955033	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9961268	0.86[EUR][1000 genomes]
rs9964120	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9967226	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40357000-40361000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr18:40357000-40361800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:40357600-40361800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr18:40359400-40361600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:40359600-40361400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:40360200-40361400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:40360200-40361600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:40360800-40361200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr18:40360800-40361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:40360800-40361200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr18:40360800-40361600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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