Variant report

Variant	rs604565
Chromosome Location	chr18:40387547-40387548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11082297	0.89[ASN][1000 genomes]
rs11872616	0.87[ASN][1000 genomes]
rs11873248	0.88[ASN][1000 genomes]
rs11876135	0.88[ASN][1000 genomes]
rs12457018	0.89[ASN][1000 genomes]
rs1626483	0.87[ASN][1000 genomes]
rs1835500	0.89[ASN][1000 genomes]
rs1943171	0.89[ASN][1000 genomes]
rs1943177	0.90[ASN][1000 genomes]
rs1943178	0.90[ASN][1000 genomes]
rs1943179	0.90[ASN][1000 genomes]
rs2642799	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28447520	0.89[ASN][1000 genomes]
rs28780768	0.86[ASN][1000 genomes]
rs476407	0.89[ASN][1000 genomes]
rs485404	0.89[ASN][1000 genomes]
rs488182	0.89[ASN][1000 genomes]
rs529072	0.89[ASN][1000 genomes]
rs559216	0.88[ASN][1000 genomes]
rs587697	0.88[ASN][1000 genomes]
rs589041	0.88[ASN][1000 genomes]
rs594272	0.88[ASN][1000 genomes]
rs597269	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs604330	0.89[ASN][1000 genomes]
rs606128	0.87[ASN][1000 genomes]
rs60827299	0.88[ASN][1000 genomes]
rs615294	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs615912	0.90[ASN][1000 genomes]
rs617272	0.90[ASN][1000 genomes]
rs621000	0.89[ASN][1000 genomes]
rs622364	0.86[ASN][1000 genomes]
rs633351	0.88[ASN][1000 genomes]
rs635930	0.88[ASN][1000 genomes]
rs646328	0.85[ASN][1000 genomes]
rs6507502	0.90[ASN][1000 genomes]
rs679462	0.89[ASN][1000 genomes]
rs7228468	0.98[ASN][1000 genomes]
rs7235419	0.89[ASN][1000 genomes]
rs7238151	0.90[ASN][1000 genomes]
rs7238693	0.90[ASN][1000 genomes]
rs7239233	0.90[ASN][1000 genomes]
rs7242948	0.95[ASN][1000 genomes]
rs8090510	0.90[ASN][1000 genomes]
rs8098030	0.90[ASN][1000 genomes]
rs8098429	0.88[ASN][1000 genomes]
rs8099760	0.90[ASN][1000 genomes]
rs9946696	0.90[ASN][1000 genomes]
rs9947110	0.90[ASN][1000 genomes]
rs9947132	0.90[ASN][1000 genomes]
rs9953581	0.87[ASN][1000 genomes]
rs9961268	0.88[ASN][1000 genomes]
rs9967226	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3337581	chr18:40387154-40390952	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40382600-40387600	Weak transcription	Fetal Lung	lung
2	chr18:40384200-40387800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:40387200-40389400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:40387400-40388800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:40387400-40389000	Enhancers	Cortex derived primary cultured neurospheres	brain

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