Variant report

Variant	rs28780768
Chromosome Location	chr18:40328193-40328194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11082297	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11872616	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11873248	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11876135	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12457018	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1626483	0.93[ASN][1000 genomes]
rs1835500	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943171	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1943177	0.94[ASN][1000 genomes]
rs1943178	0.94[ASN][1000 genomes]
rs1943179	0.94[ASN][1000 genomes]
rs2642799	0.86[ASN][1000 genomes]
rs28447520	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs476407	0.95[ASN][1000 genomes]
rs485404	0.95[ASN][1000 genomes]
rs488182	0.95[ASN][1000 genomes]
rs529072	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs559216	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs587697	0.94[ASN][1000 genomes]
rs589041	0.94[ASN][1000 genomes]
rs594272	0.94[ASN][1000 genomes]
rs597269	0.95[ASN][1000 genomes]
rs604330	0.95[ASN][1000 genomes]
rs604565	0.86[ASN][1000 genomes]
rs606128	0.93[ASN][1000 genomes]
rs60827299	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs615294	0.94[ASN][1000 genomes]
rs615912	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs617272	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621000	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs622364	0.92[ASN][1000 genomes]
rs633351	0.94[ASN][1000 genomes]
rs635930	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs646328	0.99[ASN][1000 genomes]
rs6507502	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs679462	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7228468	0.88[ASN][1000 genomes]
rs7235419	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7238151	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7238693	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7239233	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7242948	0.90[ASN][1000 genomes]
rs8090510	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8098030	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8098429	0.93[ASN][1000 genomes]
rs8099760	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9946696	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9947110	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9947132	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9953581	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9961268	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9967226	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40323000-40332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:40323600-40328600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:40327000-40328600	Weak transcription	H9 Cell Line	embryonic stem cell

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