Variant report

Variant	rs2157486
Chromosome Location	chr6:166931771-166931772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11961434	0.91[AMR][1000 genomes]
rs11962987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963921	0.91[AMR][1000 genomes]
rs11964417	0.91[AMR][1000 genomes]
rs16899058	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16899071	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16899080	0.91[AMR][1000 genomes]
rs16899084	0.91[AMR][1000 genomes]
rs16899091	0.91[AMR][1000 genomes]
rs16899093	0.83[AMR][1000 genomes]
rs16899098	0.83[AMR][1000 genomes]
rs16899101	0.83[AMR][1000 genomes]
rs16899105	0.91[AMR][1000 genomes]
rs3778414	0.91[AMR][1000 genomes]
rs4490642	0.91[AMR][1000 genomes]
rs58004496	0.83[AMR][1000 genomes]
rs59766415	0.83[AMR][1000 genomes]
rs59815364	0.91[AMR][1000 genomes]
rs6905167	0.91[AMR][1000 genomes]
rs6909530	0.83[AMR][1000 genomes]
rs6936351	0.91[AMR][1000 genomes]
rs73255153	0.91[AMR][1000 genomes]
rs73255159	0.91[AMR][1000 genomes]
rs73255165	0.91[AMR][1000 genomes]
rs73255166	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1806956	chr6:166928580-166938431	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
5	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
7	chr6:166916400-166940400	Weak transcription	Fetal Heart	heart
8	chr6:166917200-166932000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:166921400-166943600	Weak transcription	Fetal Lung	lung
10	chr6:166921600-166932000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:166921600-166932000	Weak transcription	Fetal Kidney	kidney
12	chr6:166921600-166937400	Weak transcription	Fetal Brain Male	brain
13	chr6:166923000-166937200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:166923000-166940400	Weak transcription	Aorta	Aorta
15	chr6:166923000-166943800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:166923200-166932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:166923200-166940200	Weak transcription	Ovary	ovary
18	chr6:166923200-166943200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:166923200-166943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:166923600-166936800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:166923800-166944400	Weak transcription	Psoas Muscle	Psoas
22	chr6:166923800-166953000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:166925000-166940400	Weak transcription	Adipose Nuclei	Adipose
24	chr6:166927200-166938000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:166928400-166938400	Weak transcription	Right Ventricle	heart
26	chr6:166928800-166935800	Weak transcription	Gastric	stomach
27	chr6:166928800-166935800	Weak transcription	Pancreas	Pancrea
28	chr6:166928800-166936800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:166928800-166943400	Weak transcription	Fetal Brain Female	brain
30	chr6:166929000-166932000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:166929000-166938000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:166929000-166943400	Weak transcription	Liver	Liver
33	chr6:166929200-166935200	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:166929200-166935400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:166929400-166943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:166929600-166937400	Weak transcription	HUVEC	blood vessel
37	chr6:166929600-166938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:166929600-166942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:166929600-166954000	Weak transcription	HSMM	muscle
40	chr6:166929600-166955600	Weak transcription	HMEC	breast
41	chr6:166930000-166934800	Weak transcription	Osteobl	bone
42	chr6:166930200-166932000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:166930200-166944000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:166930400-166931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:166930400-166932000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:166930400-166932000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:166930400-166932000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:166930400-166932200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:166930400-166932200	Weak transcription	Lung	lung
50	chr6:166930400-166932400	Weak transcription	Fetal Stomach	stomach

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