Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11182799	1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs11182800	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs11182801	0.95[MEX][hapmap]
rs11182802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830299	0.88[AMR][1000 genomes]
rs11836961	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11837935	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12301265	0.97[ASN][1000 genomes]
rs12304054	0.85[AMR][1000 genomes]
rs12313452	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495041	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095379	0.90[EUR][1000 genomes]
rs17095386	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57404677	0.96[ASN][1000 genomes]
rs59211662	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7138268	0.90[EUR][1000 genomes]
rs7298235	0.97[ASN][1000 genomes]
rs73275543	0.97[ASN][1000 genomes]
rs73275548	0.97[ASN][1000 genomes]
rs74080428	0.90[EUR][1000 genomes]
rs7976293	0.81[EUR][1000 genomes]
rs978696	0.81[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045857	chr12:45351172-45468784	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541485	chr12:45351172-45468784	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45428000-45430200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:45428600-45430000	Active TSS	Brain Cingulate Gyrus	brain
3	chr12:45428600-45430000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr12:45429000-45430000	Active TSS	Brain Anterior Caudate	brain
5	chr12:45429000-45430200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:45429800-45430000	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr12:45429800-45430000	Enhancers	Fetal Brain Female	brain
8	chr12:45429800-45430200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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