Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11182799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11182801	0.83[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs11182802	1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11830299	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1224436	0.82[ASN][1000 genomes]
rs12304054	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12313452	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1495041	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17095327	0.80[AMR][1000 genomes]
rs17095370	0.83[AMR][1000 genomes]
rs17095379	0.83[AMR][1000 genomes]
rs17095386	0.86[AMR][1000 genomes]
rs2160987	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs268026	1.00[CEU][hapmap]
rs421642	1.00[CEU][hapmap]
rs57404677	0.81[AFR][1000 genomes]
rs59211662	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59431125	0.83[AMR][1000 genomes]
rs7138268	0.83[AMR][1000 genomes]
rs7303544	0.82[AMR][1000 genomes]
rs7314773	0.82[AMR][1000 genomes]
rs73275543	0.85[AMR][1000 genomes]
rs73275548	0.83[AMR][1000 genomes]
rs74080428	0.85[AMR][1000 genomes]
rs7976293	0.83[AMR][1000 genomes]
rs978696	0.88[GIH][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045857	chr12:45351172-45468784	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541485	chr12:45351172-45468784	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45424400-45428800	Weak transcription	Brain Substantia Nigra	brain
2	chr12:45424600-45426600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr12:45425000-45428600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:45425600-45426600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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