Variant report

Variant	rs7314773
Chromosome Location	chr12:45386463-45386464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10785536	0.93[JPT][hapmap]
rs10785537	0.93[JPT][hapmap]
rs11182756	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11182799	0.80[AMR][1000 genomes]
rs11182800	0.85[GIH][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes]
rs11182801	0.86[MEX][hapmap]
rs11830299	0.82[AMR][1000 genomes]
rs12306208	0.82[ASN][1000 genomes]
rs1395397	0.93[JPT][hapmap]
rs17095127	0.93[JPT][hapmap]
rs17095327	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17095370	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17095379	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17095386	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1857927	0.85[JPT][hapmap]
rs2055675	0.93[JPT][hapmap]
rs2055676	0.93[JPT][hapmap]
rs2055677	0.93[JPT][hapmap]
rs2160987	0.90[MEX][hapmap]
rs2408083	0.86[JPT][hapmap];0.87[MKK][hapmap]
rs2710453	0.93[JPT][hapmap]
rs2710455	0.93[JPT][hapmap]
rs2710459	0.82[MEX][hapmap]
rs2710460	0.93[JPT][hapmap]
rs35139683	0.82[ASN][1000 genomes]
rs35531664	0.82[ASN][1000 genomes]
rs364282	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4238095	0.82[MEX][hapmap]
rs4415832	0.84[CHD][hapmap];0.93[JPT][hapmap]
rs57765913	0.85[AMR][1000 genomes]
rs59431125	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7138268	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7303544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7310114	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7310236	0.86[EUR][1000 genomes]
rs73275543	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73275548	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74080428	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7957052	0.93[JPT][hapmap]
rs7957160	0.93[JPT][hapmap]
rs7960817	0.87[JPT][hapmap]
rs7976293	0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs978696	0.81[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.95[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1045857	chr12:45351172-45468784	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541485	chr12:45351172-45468784	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469365	chr12:45353367-45388817	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv558751	chr12:45353367-45388817	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv469367	chr12:45363545-45400614	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv558753	chr12:45363545-45400614	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45386000-45387800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:45386200-45387000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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