Variant report

Variant	rs11182756
Chromosome Location	chr12:45344603-45344604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10785536	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10785537	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11182754	0.84[ASN][1000 genomes]
rs12306208	0.80[ASN][1000 genomes]
rs1395397	1.00[JPT][hapmap]
rs17095127	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17095327	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17095370	0.82[AMR][1000 genomes]
rs17095379	0.82[AMR][1000 genomes]
rs17095386	0.85[AMR][1000 genomes]
rs1857927	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs2055675	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2055676	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2055677	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2408083	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2658966	0.84[CHB][hapmap]
rs2710453	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2710455	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2710459	0.88[CHB][hapmap]
rs2710460	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs35139683	0.80[ASN][1000 genomes]
rs35531664	0.80[ASN][1000 genomes]
rs364282	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4238095	0.88[CHB][hapmap]
rs4415832	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4768075	0.88[CHB][hapmap]
rs57765913	0.89[AMR][1000 genomes]
rs59431125	0.88[AMR][1000 genomes]
rs7138268	0.82[AMR][1000 genomes]
rs7303544	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7310114	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7310236	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7314773	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73275543	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73275548	0.85[AMR][1000 genomes]
rs74080428	0.84[AMR][1000 genomes]
rs7957052	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7957160	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7960817	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7976293	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs978696	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3407092	chr12:45342734-45368068	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45344400-45345000	Active TSS	K562	blood
2	chr12:45344400-45345200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr12:45344600-45344800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr12:45344600-45344800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:45344600-45345000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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