Variant report

Variant	rs11182754
Chromosome Location	chr12:45338053-45338054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45336563..45338424-chr12:45340632..45342622,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10161447	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10785536	0.82[EUR][1000 genomes]
rs10785537	0.82[EUR][1000 genomes]
rs11182756	0.84[ASN][1000 genomes]
rs11504491	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11833874	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12227370	0.82[EUR][1000 genomes]
rs12316579	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17095127	0.82[EUR][1000 genomes]
rs1857927	0.82[AMR][1000 genomes]
rs2055675	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2055676	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2408083	0.82[EUR][1000 genomes]
rs2408085	0.82[EUR][1000 genomes]
rs2658951	0.81[AMR][1000 genomes]
rs2710455	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2710460	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2710462	0.87[EUR][1000 genomes]
rs364282	0.92[ASN][1000 genomes]
rs4415832	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4499065	0.82[EUR][1000 genomes]
rs4768577	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4768578	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56892258	0.82[EUR][1000 genomes]
rs57190502	0.82[EUR][1000 genomes]
rs74079970	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7957052	0.82[EUR][1000 genomes]
rs7957160	0.82[EUR][1000 genomes]
rs7971834	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7973268	0.82[EUR][1000 genomes]
rs7975618	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45337000-45342400	Weak transcription	HepG2	liver

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