Variant report

Variant	rs7975618
Chromosome Location	chr12:45322838-45322839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10161447	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10785536	0.82[EUR][1000 genomes]
rs10785537	0.82[EUR][1000 genomes]
rs10785540	0.81[AMR][1000 genomes]
rs11182754	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11504491	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11833874	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12227370	0.82[EUR][1000 genomes]
rs12316579	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1395397	0.81[AMR][1000 genomes]
rs17095127	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1857927	0.84[AMR][1000 genomes]
rs2055675	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2055676	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2055677	0.81[AMR][1000 genomes]
rs2408083	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2408085	0.82[EUR][1000 genomes]
rs2658951	0.83[AMR][1000 genomes]
rs2710453	0.80[AMR][1000 genomes]
rs2710455	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2710460	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2710462	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs364282	0.81[ASN][1000 genomes]
rs4300447	0.81[AMR][1000 genomes]
rs4415832	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4499065	0.82[EUR][1000 genomes]
rs4768577	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4768578	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55741117	0.81[AMR][1000 genomes]
rs56892258	0.82[EUR][1000 genomes]
rs57190502	0.82[EUR][1000 genomes]
rs74079970	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7957052	0.82[EUR][1000 genomes]
rs7957160	0.82[EUR][1000 genomes]
rs7971834	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7973268	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv977156	chr12:45320347-45324286	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45322600-45325000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:45322800-45323800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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