Variant report

Variant	rs2162565
Chromosome Location	chr7:18447378-18447379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11768283	0.86[EUR][1000 genomes]
rs2214090	0.85[CEU][hapmap]
rs73307426	0.86[EUR][1000 genomes]
rs73307427	0.86[EUR][1000 genomes]
rs73307437	0.86[EUR][1000 genomes]
rs801767	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18429200-18461200	Weak transcription	Aorta	Aorta
2	chr7:18440400-18448400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:18441000-18448000	Weak transcription	NHLF	lung
4	chr7:18441200-18450800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:18442400-18449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:18443000-18447600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:18443000-18447800	Weak transcription	NH-A	brain
8	chr7:18443000-18447800	Weak transcription	Osteobl	bone
9	chr7:18445200-18447800	Weak transcription	Adipose Nuclei	Adipose
10	chr7:18445600-18454600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:18445600-18460400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:18445600-18482000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:18445800-18447600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:18445800-18447800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:18445800-18467000	Weak transcription	Primary B cells from cord blood	blood
16	chr7:18446600-18447400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:18446600-18448200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:18446600-18448800	Enhancers	HUVEC	blood vessel
19	chr7:18446800-18448200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:18446800-18448800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:18446800-18449000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:18446800-18449000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr7:18446800-18449200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:18446800-18449200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr7:18446800-18450000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:18447000-18447400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:18447000-18447400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:18447000-18447600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:18447000-18448200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:18447000-18448400	Enhancers	HMEC	breast
31	chr7:18447000-18449000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:18447200-18447400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr7:18447200-18447600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:18447200-18449200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:18447200-18468200	Weak transcription	Primary hematopoietic stem cells	blood

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