Variant report

Variant	rs11768283
Chromosome Location	chr7:18436488-18436489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11765376	0.84[EUR][1000 genomes]
rs213270	0.80[EUR][1000 genomes]
rs213271	0.82[EUR][1000 genomes]
rs213276	0.80[EUR][1000 genomes]
rs2162565	0.86[EUR][1000 genomes]
rs73307426	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73307427	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73307437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs801767	0.87[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18426800-18437000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:18426800-18439200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:18429200-18461200	Weak transcription	Aorta	Aorta
4	chr7:18430400-18442200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:18431000-18439600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:18431400-18440400	Weak transcription	Primary B cells from cord blood	blood
7	chr7:18431600-18439800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:18433600-18436600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:18433600-18439200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:18433800-18439200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:18433800-18440400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:18434000-18439200	Weak transcription	Osteobl	bone
13	chr7:18434200-18439200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:18434200-18439600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:18434200-18439600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:18435800-18437400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:18435800-18437600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:18435800-18438400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:18435800-18441200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:18435800-18441400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:18436000-18440200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:18436200-18436600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:18436200-18437200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr7:18436200-18440800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:18436400-18436600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links