Variant report

Variant	rs213276
Chromosome Location	chr7:18510995-18510996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11765376	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11768283	0.80[EUR][1000 genomes]
rs11769654	1.00[AFR][1000 genomes]
rs213270	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs213271	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs213273	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs213274	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2214090	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs73307426	0.80[EUR][1000 genomes]
rs73307427	0.80[EUR][1000 genomes]
rs73307437	0.80[EUR][1000 genomes]
rs801767	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18499400-18511800	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18505400-18531200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr7:18509600-18514600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:18510800-18511400	Enhancers	Brain Cingulate Gyrus	brain
5	chr7:18510800-18511600	Enhancers	Brain Substantia Nigra	brain
6	chr7:18510800-18511800	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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