Variant report

Variant	rs11765376
Chromosome Location	chr7:18470762-18470763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11768283	0.84[EUR][1000 genomes]
rs213270	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs213271	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs213273	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs213274	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs213276	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2214090	0.91[EUR][1000 genomes]
rs73307426	0.84[EUR][1000 genomes]
rs73307427	0.84[EUR][1000 genomes]
rs73307437	0.84[EUR][1000 genomes]
rs801767	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18445600-18482000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:18468000-18470800	Enhancers	HMEC	breast
3	chr7:18468400-18470800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:18468800-18491400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:18469200-18471000	Weak transcription	Primary B cells from cord blood	blood
6	chr7:18470000-18476200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:18470400-18470800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:18470600-18470800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:18470600-18470800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:18470600-18472200	Strong transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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