Variant report

Variant	rs216264
Chromosome Location	chr6:24925659-24925660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs216265	0.98[EUR][1000 genomes]
rs369689	0.83[EUR][1000 genomes]
rs603510	0.81[EUR][1000 genomes]
rs606162	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683198	0.98[EUR][1000 genomes]
rs6932439	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3422272	chr6:24925373-24929771	Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24912400-24926600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:24913600-24927400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr6:24919200-24930600	Weak transcription	Gastric	stomach
4	chr6:24919800-24927600	Enhancers	Fetal Thymus	thymus
5	chr6:24919800-24928600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:24920600-24930000	Weak transcription	Right Atrium	heart
7	chr6:24920600-24932000	Weak transcription	Fetal Kidney	kidney
8	chr6:24921000-24928400	Weak transcription	Fetal Heart	heart
9	chr6:24921200-24926600	Enhancers	Dnd41	blood
10	chr6:24921200-24927800	Weak transcription	HSMMtube	muscle
11	chr6:24921200-24929600	Weak transcription	Psoas Muscle	Psoas
12	chr6:24921400-24926400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:24923400-24926600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:24923400-24927000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:24923800-24926200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:24924200-24925800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:24924200-24925800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
18	chr6:24924200-24927000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
19	chr6:24924400-24925800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:24924400-24926800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:24924400-24926800	Enhancers	Fetal Lung	lung
22	chr6:24924400-24930000	Enhancers	Hela-S3	cervix
23	chr6:24924600-24927200	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:24924600-24928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:24924600-24929400	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:24924600-24930600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:24924600-24930600	Weak transcription	Spleen	Spleen
28	chr6:24924600-24930800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:24924800-24926000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:24924800-24926000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:24924800-24926600	Enhancers	GM12878-XiMat	blood
32	chr6:24924800-24927000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:24925000-24925800	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr6:24925000-24928400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:24925000-24930800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr6:24925400-24925800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:24925400-24927000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:24925400-24927000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:24925400-24927200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:24925400-24930600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:24925600-24925800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr6:24925600-24926000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:24925600-24926000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:24925600-24926000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:24925600-24926000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:24925600-24926000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:24925600-24926000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr6:24925600-24926200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr6:24925600-24926400	Weak transcription	Thymus	Thymus
50	chr6:24925600-24926400	Genic enhancers	Monocytes-CD14+_RO01746	blood

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