Variant report

Variant	rs683198
Chromosome Location	chr6:24922358-24922359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2024688	0.86[ASN][1000 genomes]
rs216264	0.98[EUR][1000 genomes]
rs216265	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295196	0.86[ASN][1000 genomes]
rs2817736	0.86[ASN][1000 genomes]
rs369689	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3763221	0.86[ASN][1000 genomes]
rs3763224	0.86[ASN][1000 genomes]
rs4286774	0.86[ASN][1000 genomes]
rs603510	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs606162	0.87[EUR][1000 genomes]
rs6932439	0.89[EUR][1000 genomes]
rs9467334	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24912400-24926600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:24913600-24927400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr6:24918200-24922600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:24919200-24923600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
5	chr6:24919200-24930600	Weak transcription	Gastric	stomach
6	chr6:24919600-24924200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:24919600-24924200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:24919800-24923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:24919800-24927600	Enhancers	Fetal Thymus	thymus
10	chr6:24919800-24928600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:24920000-24923400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:24920000-24923400	Enhancers	Thymus	Thymus
13	chr6:24920000-24923800	Weak transcription	Spleen	Spleen
14	chr6:24920200-24922400	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr6:24920200-24923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:24920200-24923800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:24920200-24924200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:24920200-24924200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:24920600-24923800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:24920600-24924400	Weak transcription	Fetal Lung	lung
21	chr6:24920600-24930000	Weak transcription	Right Atrium	heart
22	chr6:24920600-24932000	Weak transcription	Fetal Kidney	kidney
23	chr6:24920800-24923600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:24920800-24923800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:24921000-24922600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:24921000-24923400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:24921000-24928400	Weak transcription	Fetal Heart	heart
28	chr6:24921200-24923400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:24921200-24923400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:24921200-24923600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:24921200-24923800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:24921200-24923800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:24921200-24924200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:24921200-24924200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:24921200-24924600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:24921200-24926600	Enhancers	Dnd41	blood
37	chr6:24921200-24927800	Weak transcription	HSMMtube	muscle
38	chr6:24921200-24929600	Weak transcription	Psoas Muscle	Psoas
39	chr6:24921400-24922400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:24921400-24923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:24921400-24923600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:24921400-24924200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:24921400-24924200	Genic enhancers	Primary B cells from cord blood	blood
44	chr6:24921400-24924200	Weak transcription	Brain Germinal Matrix	brain
45	chr6:24921400-24926400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:24921600-24922400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:24921600-24923600	Enhancers	GM12878-XiMat	blood
48	chr6:24921800-24922600	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:24921800-24922600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:24921800-24923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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