Variant report

Variant	rs2817736
Chromosome Location	chr6:24919911-24919912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10946735	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16889704	1.00[CEU][hapmap]
rs2024688	1.00[ASN][1000 genomes]
rs216265	0.86[ASN][1000 genomes]
rs2295196	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3763221	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3763224	1.00[ASN][1000 genomes]
rs4286774	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs683198	0.86[ASN][1000 genomes]
rs9467334	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24912400-24926600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:24913400-24922200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:24913600-24927400	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr6:24914600-24920000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:24916000-24922000	Genic enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:24917600-24921400	Enhancers	Brain Germinal Matrix	brain
7	chr6:24917600-24922000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:24917800-24921200	Enhancers	Psoas Muscle	Psoas
9	chr6:24918200-24920200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:24918200-24920600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:24918200-24920600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:24918200-24920600	Enhancers	Fetal Stomach	stomach
13	chr6:24918200-24921200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:24918200-24921200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:24918200-24921400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:24918200-24921600	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:24918200-24921800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:24918200-24922600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:24918400-24920200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:24918400-24921000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:24918600-24920000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:24918600-24920600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:24918600-24920800	Enhancers	HSMM	muscle
24	chr6:24918600-24921200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:24918600-24921200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:24918600-24921200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:24918600-24921400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:24918600-24921800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:24918800-24920000	Enhancers	Adipose Nuclei	Adipose
30	chr6:24918800-24920000	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:24918800-24920200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:24918800-24920600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:24918800-24920600	Enhancers	Fetal Kidney	kidney
34	chr6:24918800-24920600	Enhancers	Fetal Lung	lung
35	chr6:24918800-24920600	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:24918800-24920800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:24918800-24920800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:24918800-24921000	Enhancers	Fetal Heart	heart
39	chr6:24918800-24921200	Flanking Active TSS	Dnd41	blood
40	chr6:24918800-24921400	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
41	chr6:24918800-24921800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:24918800-24922000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
43	chr6:24919000-24920000	Enhancers	Right Ventricle	heart
44	chr6:24919000-24920000	Enhancers	Spleen	Spleen
45	chr6:24919000-24920000	Enhancers	Osteobl	bone
46	chr6:24919000-24920200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:24919000-24920200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:24919000-24920200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
49	chr6:24919000-24920200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:24919000-24920200	Enhancers	Brain Anterior Caudate	brain

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