Variant report

Variant	rs2163423
Chromosome Location	chr3:88067959-88067960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10511136	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11128018	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128019	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11717021	0.88[EUR][1000 genomes]
rs11717413	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11915058	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12714696	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13074576	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1431153	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1469569	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1503433	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1604699	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17549213	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17549345	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1835542	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1835543	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2016224	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2099229	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2344185	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2880801	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2880802	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35040143	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858925	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4858969	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4858971	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858972	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858974	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858975	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55840331	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60099577	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67047416	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6770013	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6778211	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6781226	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6781901	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6785333	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68042814	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7629565	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7630716	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7637503	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7652406	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9310061	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9852704	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9855839	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9859034	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9861809	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9863076	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9878862	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9880480	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88067000-88068800	Enhancers	Dnd41	blood
2	chr3:88067200-88068800	Enhancers	Primary T cells from cord blood	blood
3	chr3:88067200-88069000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:88067400-88068600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:88067600-88068000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:88067600-88068800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:88067600-88069000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr3:88067800-88069200	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links