Variant report

Variant	rs11717021
Chromosome Location	chr3:88034271-88034272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10511136	0.80[EUR][1000 genomes]
rs11717413	0.80[EUR][1000 genomes]
rs12714696	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13074576	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1431153	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1469569	0.82[EUR][1000 genomes]
rs1503433	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1604699	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17025241	0.81[ASN][1000 genomes]
rs1835542	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1835543	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2016224	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2099229	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2163423	0.88[EUR][1000 genomes]
rs2880801	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2880802	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35040143	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858925	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858969	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858971	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858972	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858974	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858975	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58658187	0.81[ASN][1000 genomes]
rs67566069	0.81[ASN][1000 genomes]
rs6770013	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6778211	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6781226	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6781901	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6787253	0.81[ASN][1000 genomes]
rs6804848	0.81[ASN][1000 genomes]
rs73140133	0.81[ASN][1000 genomes]
rs7629565	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7630716	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637503	0.81[EUR][1000 genomes]
rs7652406	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9310061	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9681975	0.81[ASN][1000 genomes]
rs9855839	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9861809	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9863076	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9878862	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88020600-88037000	Weak transcription	K562	blood
2	chr3:88029600-88039800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:88030200-88045400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:88031400-88035400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:88033400-88037000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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