Variant report

Variant	rs73140133
Chromosome Location	chr3:88067498-88067499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11717021	0.81[ASN][1000 genomes]
rs12714696	0.84[ASN][1000 genomes]
rs13074576	0.88[ASN][1000 genomes]
rs1431153	0.88[ASN][1000 genomes]
rs1503433	0.88[ASN][1000 genomes]
rs1604699	0.83[ASN][1000 genomes]
rs17025236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17025241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835542	0.88[ASN][1000 genomes]
rs1835543	0.88[ASN][1000 genomes]
rs2016224	0.88[ASN][1000 genomes]
rs2082226	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2099229	0.83[ASN][1000 genomes]
rs2880801	0.81[ASN][1000 genomes]
rs2880802	0.83[ASN][1000 genomes]
rs35040143	0.88[ASN][1000 genomes]
rs4858925	0.84[ASN][1000 genomes]
rs4858969	0.84[ASN][1000 genomes]
rs4858971	0.88[ASN][1000 genomes]
rs4858972	0.85[ASN][1000 genomes]
rs4858974	0.88[ASN][1000 genomes]
rs4858975	0.88[ASN][1000 genomes]
rs56006017	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56173847	0.84[EUR][1000 genomes]
rs56323967	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58658187	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67566069	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770013	0.84[ASN][1000 genomes]
rs6778211	0.84[ASN][1000 genomes]
rs6781226	0.84[ASN][1000 genomes]
rs6781901	0.88[ASN][1000 genomes]
rs6787253	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798161	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6804199	0.84[EUR][1000 genomes]
rs6804848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68068970	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73140134	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73144053	0.83[EUR][1000 genomes]
rs7629565	0.88[ASN][1000 genomes]
rs7630716	0.84[ASN][1000 genomes]
rs7652406	0.88[ASN][1000 genomes]
rs9310061	0.88[ASN][1000 genomes]
rs9681975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855839	0.88[ASN][1000 genomes]
rs9861809	0.88[ASN][1000 genomes]
rs9863076	0.84[ASN][1000 genomes]
rs9878862	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88067000-88068800	Enhancers	Dnd41	blood
2	chr3:88067200-88067600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:88067200-88068800	Enhancers	Primary T cells from cord blood	blood
4	chr3:88067200-88069000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:88067400-88068600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links