Variant report

Variant	rs2082226
Chromosome Location	chr3:88029726-88029727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12714696	0.86[ASN][1000 genomes]
rs13074576	0.83[ASN][1000 genomes]
rs1431153	0.83[ASN][1000 genomes]
rs1503433	0.83[ASN][1000 genomes]
rs1604699	0.88[ASN][1000 genomes]
rs17025236	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17025241	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835542	0.83[ASN][1000 genomes]
rs1835543	0.83[ASN][1000 genomes]
rs2016224	0.83[ASN][1000 genomes]
rs2099229	0.88[ASN][1000 genomes]
rs2880801	0.86[ASN][1000 genomes]
rs2880802	0.88[ASN][1000 genomes]
rs35040143	0.83[ASN][1000 genomes]
rs4858925	0.87[ASN][1000 genomes]
rs4858969	0.87[ASN][1000 genomes]
rs4858971	0.83[ASN][1000 genomes]
rs4858972	0.81[ASN][1000 genomes]
rs4858974	0.83[ASN][1000 genomes]
rs4858975	0.83[ASN][1000 genomes]
rs56006017	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56173847	0.84[EUR][1000 genomes]
rs56323967	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58658187	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67566069	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770013	0.86[ASN][1000 genomes]
rs6778211	0.87[ASN][1000 genomes]
rs6781226	0.86[ASN][1000 genomes]
rs6781901	0.83[ASN][1000 genomes]
rs6787253	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6798161	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6804199	0.84[EUR][1000 genomes]
rs6804848	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68068970	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73140133	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73140134	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73144053	0.83[EUR][1000 genomes]
rs7629565	0.83[ASN][1000 genomes]
rs7630716	0.86[ASN][1000 genomes]
rs7652406	0.83[ASN][1000 genomes]
rs9310061	0.83[ASN][1000 genomes]
rs9681975	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9855839	0.83[ASN][1000 genomes]
rs9861809	0.83[ASN][1000 genomes]
rs9863076	0.86[ASN][1000 genomes]
rs9878862	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88020600-88037000	Weak transcription	K562	blood
2	chr3:88026800-88029800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:88028600-88030200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr3:88028800-88030000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:88028800-88030000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:88029600-88031800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:88029600-88039800	Weak transcription	Primary hematopoietic stem cells	blood

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