Variant report

Variant	rs6804199
Chromosome Location	chr3:88026822-88026823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17025236	0.84[EUR][1000 genomes]
rs17025241	0.84[EUR][1000 genomes]
rs2082226	0.84[EUR][1000 genomes]
rs56323967	0.84[EUR][1000 genomes]
rs56398417	0.80[EUR][1000 genomes]
rs58658187	0.84[EUR][1000 genomes]
rs67566069	0.84[EUR][1000 genomes]
rs6787253	0.84[EUR][1000 genomes]
rs6798161	0.84[EUR][1000 genomes]
rs6804848	0.84[EUR][1000 genomes]
rs68068970	0.84[EUR][1000 genomes]
rs73140133	0.84[EUR][1000 genomes]
rs73140134	0.82[EUR][1000 genomes]
rs9681975	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:88020600-88037000	Weak transcription	K562	blood
3	chr3:88022000-88027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:88026800-88029800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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