Variant report

Variant	rs17025236
Chromosome Location	chr3:88048326-88048327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12714696	0.84[ASN][1000 genomes]
rs13074576	0.87[ASN][1000 genomes]
rs1431153	0.87[ASN][1000 genomes]
rs1503433	0.87[ASN][1000 genomes]
rs1604699	0.82[ASN][1000 genomes]
rs17025241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1835542	0.87[ASN][1000 genomes]
rs1835543	0.87[ASN][1000 genomes]
rs2016224	0.87[ASN][1000 genomes]
rs2082226	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2099229	0.82[ASN][1000 genomes]
rs2880801	0.81[ASN][1000 genomes]
rs2880802	0.82[ASN][1000 genomes]
rs35040143	0.87[ASN][1000 genomes]
rs4858925	0.83[ASN][1000 genomes]
rs4858969	0.83[ASN][1000 genomes]
rs4858971	0.87[ASN][1000 genomes]
rs4858972	0.85[ASN][1000 genomes]
rs4858974	0.87[ASN][1000 genomes]
rs4858975	0.87[ASN][1000 genomes]
rs56006017	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56173847	0.84[EUR][1000 genomes]
rs56323967	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58658187	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67566069	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6770013	0.84[ASN][1000 genomes]
rs6778211	0.83[ASN][1000 genomes]
rs6781226	0.84[ASN][1000 genomes]
rs6781901	0.87[ASN][1000 genomes]
rs6787253	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6798161	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804199	0.84[EUR][1000 genomes]
rs6804848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68068970	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73140133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73140134	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73144053	0.83[EUR][1000 genomes]
rs7629565	0.87[ASN][1000 genomes]
rs7630716	0.84[ASN][1000 genomes]
rs7652406	0.87[ASN][1000 genomes]
rs9310061	0.87[ASN][1000 genomes]
rs9681975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9855839	0.87[ASN][1000 genomes]
rs9861809	0.87[ASN][1000 genomes]
rs9863076	0.84[ASN][1000 genomes]
rs9878862	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88046000-88048600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:88046800-88048600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:88046800-88048600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:88046800-88049800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:88046800-88050000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:88046800-88050000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:88046800-88050000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:88046800-88050000	Weak transcription	Gastric	stomach
9	chr3:88046800-88050000	Weak transcription	NH-A	brain
10	chr3:88046800-88054400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:88047000-88048400	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:88047000-88050000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:88047200-88050000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:88047400-88048600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:88047400-88048800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:88047400-88049800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:88047400-88050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:88047400-88050000	Weak transcription	Liver	Liver
19	chr3:88047400-88050000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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