Variant report
| Variant | rs2164387 |
|---|---|
| Chromosome Location | chr4:30422204-30422205 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10023700 | 1.00[ASN][1000 genomes] |
| rs10028787 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10033724 | 1.00[ASN][1000 genomes] |
| rs10517199 | 1.00[ASN][1000 genomes] |
| rs10939300 | 1.00[ASN][1000 genomes] |
| rs1435782 | 1.00[ASN][1000 genomes] |
| rs1435784 | 0.86[ASN][1000 genomes] |
| rs16883445 | 1.00[ASN][1000 genomes] |
| rs16883495 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2082862 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28398386 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6448706 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6816781 | 1.00[ASN][1000 genomes] |
| rs6833043 | 1.00[ASN][1000 genomes] |
| rs6837428 | 1.00[ASN][1000 genomes] |
| rs6837626 | 1.00[ASN][1000 genomes] |
| rs6858756 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73215032 | 1.00[EUR][1000 genomes] |
| rs73215068 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7672498 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7692546 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461315 | chr4:30348053-30658535 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv593898 | chr4:30348053-30658535 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv878805 | chr4:30385756-30473099 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30419600-30426200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
