Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10023700	1.00[ASN][1000 genomes]
rs10028787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033724	1.00[ASN][1000 genomes]
rs10517199	1.00[ASN][1000 genomes]
rs10939300	1.00[ASN][1000 genomes]
rs1435782	1.00[ASN][1000 genomes]
rs1435784	0.86[ASN][1000 genomes]
rs16883445	1.00[ASN][1000 genomes]
rs16883495	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28398386	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816781	1.00[ASN][1000 genomes]
rs6833043	1.00[ASN][1000 genomes]
rs6837428	1.00[ASN][1000 genomes]
rs6837626	1.00[ASN][1000 genomes]
rs6858756	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73215032	1.00[EUR][1000 genomes]
rs7672498	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878805	chr4:30385756-30473099	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv878806	chr4:30432141-30508931	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv878807	chr4:30437096-30508931	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30444400-30445200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:30444400-30445400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:30444400-30445600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:30444400-30445600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:30444600-30445200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:30444600-30445400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:30444600-30445600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:30444600-30445600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:30444800-30445200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr4:30444800-30445400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:30444800-30445400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:30444800-30445400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:30444800-30445400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:30444800-30445600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:30445000-30445400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:30445000-30445400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:30445000-30445400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:30445000-30445400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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