Variant report

Variant	rs2164790
Chromosome Location	chr1:220335430-220335431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220266412..220267942-chr1:220334824..220337185,2	K562	blood:
2	chr1:220321360..220324045-chr1:220335150..220337178,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067704	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10863533	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12037461	0.81[EUR][1000 genomes]
rs2289190	0.83[EUR][1000 genomes]
rs3738337	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3767654	0.83[EUR][1000 genomes]
rs59541021	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61830432	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61830448	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220304800-220335600	Strong transcription	Placenta	Placenta
2	chr1:220305400-220347000	Strong transcription	Dnd41	blood
3	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:220305600-220347600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:220305800-220347000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:220306600-220336600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:220306600-220346600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:220306600-220348200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:220308400-220339600	Weak transcription	Psoas Muscle	Psoas
10	chr1:220311200-220343400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:220312200-220347400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:220319000-220341400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:220320400-220341800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:220320600-220336600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:220323000-220341000	Strong transcription	HSMM	muscle
16	chr1:220323800-220336600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:220323800-220348000	Strong transcription	Primary B cells from cord blood	blood
18	chr1:220324000-220335800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr1:220324000-220347000	Strong transcription	HMEC	breast
20	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:220325200-220335600	Strong transcription	Osteobl	bone
22	chr1:220325400-220343800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:220325400-220347000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:220325400-220356000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:220328000-220339800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:220328000-220339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:220328000-220339800	Weak transcription	Colonic Mucosa	Colon
28	chr1:220330200-220345000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:220330600-220339800	Weak transcription	Pancreas	Pancrea
30	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
31	chr1:220330800-220339600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr1:220330800-220339800	Weak transcription	Aorta	Aorta
33	chr1:220330800-220339800	Weak transcription	Esophagus	oesophagus
34	chr1:220330800-220339800	Weak transcription	Gastric	stomach
35	chr1:220330800-220340400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr1:220330800-220340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr1:220330800-220343800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr1:220330800-220344000	Weak transcription	Spleen	Spleen
39	chr1:220330800-220344200	Weak transcription	NHEK	skin
40	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:220331000-220339600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr1:220331000-220339600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:220331000-220339800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:220331200-220339600	Weak transcription	Brain Anterior Caudate	brain
45	chr1:220331400-220339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr1:220331400-220339800	Weak transcription	Brain Germinal Matrix	brain
47	chr1:220331400-220339800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:220331400-220339800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:220331600-220339400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr1:220331600-220339800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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