The 2.0 version of rSNPBase

Variant report

Variant rs61830448
Chromosome Location chr1:220365324-220365325
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220305400-220376600 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr1:220325000-220398400 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:220330800-220378600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:220341200-220369200 Weak transcription Fetal Heart heart
5 chr1:220344800-220365600 Weak transcription Brain Substantia Nigra brain
6 chr1:220345400-220391400 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:220348000-220386800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr1:220349600-220369600 Strong transcription Primary monocytes fromperipheralblood blood
9 chr1:220350000-220386200 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr1:220350600-220387800 Weak transcription Stomach Mucosa stomach
11 chr1:220350800-220366000 Weak transcription Esophagus oesophagus
12 chr1:220350800-220378800 Weak transcription Pancreas Pancrea
13 chr1:220353200-220386600 Strong transcription HUES64 Cell Line embryonic stem cell
14 chr1:220353800-220386400 Strong transcription iPS-20b Cell Line embryonic stem cell
15 chr1:220354000-220368800 Strong transcription Fetal Thymus thymus
16 chr1:220354400-220375000 Strong transcription GM12878-XiMat blood
17 chr1:220354400-220386800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:220355000-220369600 Strong transcription Primary T regulatory cells fromperipheralblood blood
19 chr1:220355200-220371800 Weak transcription Psoas Muscle Psoas
20 chr1:220355200-220374000 Weak transcription Brain Germinal Matrix brain
21 chr1:220355400-220374000 Weak transcription Right Ventricle heart
22 chr1:220355400-220378600 Weak transcription Gastric stomach
23 chr1:220356000-220368400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr1:220358000-220376000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:220358000-220381600 Strong transcription HUES48 Cell Line embryonic stem cell
26 chr1:220358000-220382000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:220358200-220365800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:220358200-220368600 Strong transcription Adipose Nuclei Adipose
29 chr1:220358200-220369400 Strong transcription Primary T cells fromperipheralblood blood
30 chr1:220358200-220369400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:220358400-220369400 Strong transcription Dnd41 blood
32 chr1:220358400-220377600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr1:220358600-220385800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:220359000-220368800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:220359000-220369800 Strong transcription HUES6 Cell Line embryonic stem cell
36 chr1:220359000-220385000 Strong transcription Liver Liver
37 chr1:220359200-220386000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:220359400-220368400 Strong transcription Fetal Muscle Trunk muscle
39 chr1:220359400-220369600 Strong transcription Placenta Placenta
40 chr1:220359400-220369800 Strong transcription Osteobl bone
41 chr1:220359400-220376600 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr1:220359400-220377000 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr1:220359400-220385800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:220359400-220386800 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr1:220359600-220368800 Strong transcription iPS-18 Cell Line embryonic stem cell
46 chr1:220359600-220368800 Strong transcription HSMM muscle
47 chr1:220359600-220369800 Strong transcription Primary T helper cells PMA-I stimulated --
48 chr1:220359600-220378400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:220359800-220368200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr1:220359800-220368800 Strong transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015