Variant report

Variant	rs2165129
Chromosome Location	chr1:213664461-213664462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1025765	0.87[ASN][1000 genomes]
rs105959	0.90[ASN][1000 genomes]
rs11120146	0.86[ASN][1000 genomes]
rs11120147	0.87[ASN][1000 genomes]
rs2165130	0.86[ASN][1000 genomes]
rs2165133	0.87[ASN][1000 genomes]
rs2173482	0.86[ASN][1000 genomes]
rs320374	0.86[ASN][1000 genomes]
rs451083	0.87[ASN][1000 genomes]
rs6660266	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs893664	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv549179	chr1:213641943-213674732	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213664000-213667600	Enhancers	HepG2	liver
2	chr1:213664200-213665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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