Variant report

Variant	rs2165877
Chromosome Location	chr17:33846369-33846370
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11654795	0.83[ASN][1000 genomes]
rs12450474	0.88[ASN][1000 genomes]
rs4796093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6505479	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8066424	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8070473	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33835400-33849600	Weak transcription	Spleen	Spleen
2	chr17:33837800-33846800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:33842200-33846400	Weak transcription	Primary T cells from cord blood	blood
4	chr17:33842400-33847200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:33842800-33848200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr17:33843000-33846800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:33843200-33852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr17:33843400-33846800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:33845400-33846800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:33845600-33846600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr17:33845600-33846600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr17:33846000-33846600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:33846000-33846600	Strong transcription	Dnd41	blood
14	chr17:33846000-33847200	ZNF genes & repeats	GM12878-XiMat	blood
15	chr17:33846000-33848200	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr17:33846000-33848200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:33846000-33848200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:33846000-33848600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:33846200-33847000	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr17:33846200-33847200	Enhancers	Duodenum Mucosa	Duodenum
21	chr17:33846200-33847400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr17:33846200-33849600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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