Variant report

Variant	rs6505479
Chromosome Location	chr17:33848594-33848595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33469068..33470787-chr17:33848506..33850097,2	K562	blood:

Variant related genes	Relation type
ENSG00000073536	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11654795	0.84[ASN][1000 genomes]
rs12450474	0.89[ASN][1000 genomes]
rs2165877	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796093	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066424	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070473	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33835400-33849600	Weak transcription	Spleen	Spleen
2	chr17:33843200-33852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr17:33846000-33848600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:33846200-33849600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr17:33846400-33852000	Enhancers	Primary T cells from cord blood	blood
6	chr17:33846600-33849200	Genic enhancers	Dnd41	blood
7	chr17:33846800-33851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr17:33847000-33848600	Weak transcription	NHEK	skin
9	chr17:33847000-33849200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr17:33847200-33848600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr17:33847400-33848800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr17:33847600-33849200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr17:33847600-33851400	Enhancers	Primary hematopoietic stem cells	blood
14	chr17:33847600-33851600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr17:33847800-33848800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:33847800-33849400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:33848200-33848600	Strong transcription	GM12878-XiMat	blood
18	chr17:33848200-33848800	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
19	chr17:33848200-33849200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:33848200-33849200	Enhancers	HUVEC	blood vessel
21	chr17:33848200-33849400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
22	chr17:33848200-33849600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr17:33848200-33850000	Enhancers	Thymus	Thymus
24	chr17:33848400-33848600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr17:33848400-33848600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:33848400-33848600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr17:33848400-33848800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr17:33848400-33848800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:33848400-33849000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr17:33848400-33849000	Enhancers	Fetal Thymus	thymus
31	chr17:33848400-33849000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links