Variant report
| Variant | rs2165991 |
|---|---|
| Chromosome Location | chr15:53101700-53101701 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1814459 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1899752 | 0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1947043 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2120442 | 0.91[CEU][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2243790 | 0.84[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs2244272 | 0.91[CEU][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2247401 | 0.85[EUR][1000 genomes] |
| rs2440315 | 0.81[CEU][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs2440316 | 0.90[EUR][1000 genomes] |
| rs2440349 | 0.85[EUR][1000 genomes] |
| rs2440350 | 0.85[EUR][1000 genomes] |
| rs2440352 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs2440373 | 0.87[EUR][1000 genomes] |
| rs2440374 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2456496 | 0.88[EUR][1000 genomes] |
| rs2456506 | 0.86[EUR][1000 genomes] |
| rs2456512 | 0.84[EUR][1000 genomes] |
| rs2456513 | 0.83[EUR][1000 genomes] |
| rs2456517 | 0.84[EUR][1000 genomes] |
| rs2456523 | 0.84[EUR][1000 genomes] |
| rs2456531 | 0.84[CEU][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2460 | 0.86[EUR][1000 genomes] |
| rs28687152 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7161874 | 0.84[EUR][1000 genomes] |
| rs935192 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs935194 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471245 | chr15:52607262-53187165 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041421 | chr15:52661342-53148286 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046970 | chr15:53065114-53142386 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | n/a |
| 4 | nsv569428 | chr15:53069874-53140045 | Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53100600-53116600 | Weak transcription | Liver | Liver |
