Variant report

Variant	rs935194
Chromosome Location	chr15:53164086-53164087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1814459	0.98[EUR][1000 genomes]
rs1947043	0.91[EUR][1000 genomes]
rs2120442	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2165991	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2244272	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2247401	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2440349	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2440350	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2440352	0.90[CEU][hapmap]
rs2440374	0.81[EUR][1000 genomes]
rs2456512	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2456513	0.96[EUR][1000 genomes]
rs2456517	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7161874	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs935192	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1043999	chr15:53162917-53187508	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53163800-53164800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links