Variant report

Variant	rs2166338
Chromosome Location	chr5:114741028-114741029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12523614	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12652178	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12652193	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12654224	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12658313	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2124393	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2124394	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2124395	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2260996	0.84[AFR][1000 genomes]
rs2260998	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2416408	0.83[AFR][1000 genomes]
rs2416410	0.83[AFR][1000 genomes]
rs2591250	0.83[AFR][1000 genomes]
rs2591252	0.83[AFR][1000 genomes]
rs2591254	0.83[AFR][1000 genomes]
rs2591255	0.83[AFR][1000 genomes]
rs2591262	1.00[AMR][1000 genomes]
rs2591263	1.00[AMR][1000 genomes]
rs2591266	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2591270	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2605186	0.83[AFR][1000 genomes]
rs2605188	0.83[AFR][1000 genomes]
rs2605189	0.83[AFR][1000 genomes]
rs2605191	0.83[AFR][1000 genomes]
rs2605192	0.85[AMR][1000 genomes]
rs2605193	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2925188	0.83[AFR][1000 genomes]
rs2925189	0.83[AFR][1000 genomes]
rs2964548	0.83[AFR][1000 genomes]
rs35561259	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57327202	0.88[AFR][1000 genomes]
rs58409112	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60523123	0.86[AFR][1000 genomes]
rs61552449	0.84[AFR][1000 genomes]
rs62372573	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62372574	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6865409	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6865555	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs959872	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114739600-114741200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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