Variant report

Variant	rs2591262
Chromosome Location	chr5:114739963-114739964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12523614	0.83[AMR][1000 genomes]
rs12652178	0.83[AMR][1000 genomes]
rs12652193	0.83[AMR][1000 genomes]
rs12654224	0.83[AMR][1000 genomes]
rs12658313	0.83[AMR][1000 genomes]
rs2124393	0.83[AMR][1000 genomes]
rs2124394	0.83[AMR][1000 genomes]
rs2124395	0.83[AMR][1000 genomes]
rs2166338	1.00[AMR][1000 genomes]
rs2260998	0.83[AMR][1000 genomes]
rs2591263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2591266	0.83[AMR][1000 genomes]
rs2591270	0.83[AMR][1000 genomes]
rs2605192	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2605193	0.83[AMR][1000 genomes]
rs35561259	0.83[AMR][1000 genomes]
rs58409112	0.83[AMR][1000 genomes]
rs62372573	0.83[AMR][1000 genomes]
rs62372574	0.83[AMR][1000 genomes]
rs6865409	0.83[AMR][1000 genomes]
rs6865555	0.83[AMR][1000 genomes]
rs959872	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114739600-114741200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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