Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10811582	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10811584	0.80[ASN][1000 genomes]
rs12380505	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1452658	0.80[ASN][1000 genomes]
rs1840050	0.80[ASN][1000 genomes]
rs1889680	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2123338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4428748	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4560881	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6475547	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475548	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475549	0.80[ASN][1000 genomes]
rs6475550	0.80[ASN][1000 genomes]
rs6475552	0.80[ASN][1000 genomes]
rs7047136	0.80[ASN][1000 genomes]
rs7848524	0.80[ASN][1000 genomes]
rs7857636	0.80[ASN][1000 genomes]
rs7858959	0.80[ASN][1000 genomes]
rs7867994	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7868091	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9298821	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9298822	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21685200-21695600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:21688400-21696200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:21690600-21701200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:21691000-21695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21691600-21695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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