Variant report

Variant	rs7857636
Chromosome Location	chr9:21700172-21700173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10738597	0.80[ASN][1000 genomes]
rs10757236	0.84[ASN][1000 genomes]
rs10757238	0.81[ASN][1000 genomes]
rs10757239	0.81[ASN][1000 genomes]
rs10757240	0.81[ASN][1000 genomes]
rs10757241	0.81[ASN][1000 genomes]
rs10757242	0.81[ASN][1000 genomes]
rs10757245	0.80[ASN][1000 genomes]
rs10757246	0.80[ASN][1000 genomes]
rs10757247	0.80[ASN][1000 genomes]
rs10757251	0.80[ASN][1000 genomes]
rs10811584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811592	0.84[ASN][1000 genomes]
rs10811595	0.84[ASN][1000 genomes]
rs10811600	0.81[ASN][1000 genomes]
rs10811601	0.81[ASN][1000 genomes]
rs10811602	0.81[ASN][1000 genomes]
rs10811604	0.81[ASN][1000 genomes]
rs10811605	0.81[ASN][1000 genomes]
rs12380505	0.80[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1335498	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335499	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335500	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335501	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335502	0.81[ASN][1000 genomes]
rs1335505	0.80[ASN][1000 genomes]
rs1335506	0.80[ASN][1000 genomes]
rs1335507	0.80[ASN][1000 genomes]
rs1335508	0.80[ASN][1000 genomes]
rs1345027	0.81[ASN][1000 genomes]
rs1372057	0.80[ASN][1000 genomes]
rs1372058	0.80[ASN][1000 genomes]
rs1372059	0.80[ASN][1000 genomes]
rs1414232	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414233	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414234	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414236	0.81[ASN][1000 genomes]
rs1414237	0.81[ASN][1000 genomes]
rs1414238	0.81[ASN][1000 genomes]
rs1414242	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs1414244	0.80[ASN][1000 genomes]
rs1414245	0.80[ASN][1000 genomes]
rs1414246	0.80[ASN][1000 genomes]
rs1414247	0.80[ASN][1000 genomes]
rs1414248	0.80[ASN][1000 genomes]
rs1414249	0.80[ASN][1000 genomes]
rs1452658	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889680	0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1965153	0.82[ASN][1000 genomes]
rs2004627	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2027162	0.81[ASN][1000 genomes]
rs2027163	0.81[ASN][1000 genomes]
rs2043991	0.83[ASN][1000 genomes]
rs2119466	0.80[ASN][1000 genomes]
rs2119467	0.80[ASN][1000 genomes]
rs2123338	0.91[CEU][hapmap];0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2165408	0.81[CHB][hapmap]
rs2165411	0.83[ASN][1000 genomes]
rs2167691	0.80[ASN][1000 genomes]
rs2383202	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2891159	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs2891160	0.81[ASN][1000 genomes]
rs2891164	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2891165	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35875883	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3928894	0.81[CHB][hapmap]
rs4350062	0.81[ASN][1000 genomes]
rs4364717	0.81[CHB][hapmap]
rs4384075	0.80[ASN][1000 genomes]
rs4548267	0.80[ASN][1000 genomes]
rs4560881	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620363	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4636294	0.80[ASN][1000 genomes]
rs6475547	0.80[ASN][1000 genomes]
rs6475548	0.80[ASN][1000 genomes]
rs6475549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475550	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6475552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475554	0.84[ASN][1000 genomes]
rs6475555	0.84[ASN][1000 genomes]
rs6475564	0.83[ASN][1000 genomes]
rs6475566	0.81[ASN][1000 genomes]
rs6475568	0.81[ASN][1000 genomes]
rs6475569	0.81[ASN][1000 genomes]
rs6475574	0.80[ASN][1000 genomes]
rs7021538	0.81[ASN][1000 genomes]
rs7023299	0.83[ASN][1000 genomes]
rs7023474	0.81[CHB][hapmap]
rs7028913	0.84[ASN][1000 genomes]
rs7029040	0.84[ASN][1000 genomes]
rs7029166	0.84[ASN][1000 genomes]
rs7029274	0.84[ASN][1000 genomes]
rs7039487	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043827	0.83[ASN][1000 genomes]
rs7047136	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751173	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852900	0.80[ASN][1000 genomes]
rs7853131	0.80[ASN][1000 genomes]
rs7854018	0.81[ASN][1000 genomes]
rs7854222	0.82[ASN][1000 genomes]
rs7855242	0.83[ASN][1000 genomes]
rs7858959	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858991	0.81[ASN][1000 genomes]
rs7860576	0.84[ASN][1000 genomes]
rs7867994	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7868091	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7871345	0.83[ASN][1000 genomes]
rs7874319	0.81[ASN][1000 genomes]
rs869330	0.81[CHB][hapmap]
rs871024	0.81[CHB][hapmap]
rs9298821	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298822	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298823	0.80[ASN][1000 genomes]
rs9298824	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv471290	chr9:21694038-21721939	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892744	chr9:21694039-21746419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21690600-21701200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:21696600-21707000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:21699600-21707600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:21699800-21700400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links