Variant report

Variant	rs6475554
Chromosome Location	chr9:21716887-21716888
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs10118262	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10119658	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10738595	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738596	0.81[ASN][1000 genomes]
rs10738597	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10738599	0.89[ASN][1000 genomes]
rs10757236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10757238	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757239	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757240	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757241	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757242	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757243	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10757245	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10757246	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10757247	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10757250	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757251	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10757252	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757253	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10757254	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10757255	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10811584	0.84[ASN][1000 genomes]
rs10811592	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811595	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811600	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10811601	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10811602	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10811604	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10811605	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10811613	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10965122	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10965127	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1335498	0.86[ASN][1000 genomes]
rs1335499	0.86[ASN][1000 genomes]
rs1335500	0.86[ASN][1000 genomes]
rs1335501	0.86[ASN][1000 genomes]
rs1335502	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1335505	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335506	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335507	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335508	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335512	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1345025	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1345026	0.81[ASN][1000 genomes]
rs1345027	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372057	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1372058	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1372059	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1414228	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1414229	0.89[ASN][1000 genomes]
rs1414232	0.86[ASN][1000 genomes]
rs1414233	0.86[ASN][1000 genomes]
rs1414234	0.86[ASN][1000 genomes]
rs1414236	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1414237	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1414238	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1414240	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1414241	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1414242	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414244	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414245	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414246	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414247	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414248	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414249	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414250	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414251	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414252	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414256	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414257	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440993	0.87[ASN][1000 genomes]
rs1452658	0.84[ASN][1000 genomes]
rs1556696	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556697	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1561651	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1561652	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17833407	0.84[ASN][1000 genomes]
rs1840050	0.84[ASN][1000 genomes]
rs1932237	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1965153	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2004627	0.81[ASN][1000 genomes]
rs2027162	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2027163	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2043991	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119466	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119467	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2152272	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2152273	0.89[ASN][1000 genomes]
rs2165411	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2184551	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2218220	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2383202	0.86[ASN][1000 genomes]
rs2891159	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891160	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2891164	0.86[ASN][1000 genomes]
rs2891165	0.86[ASN][1000 genomes]
rs3849929	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4300088	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4350062	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4352937	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4384075	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4548267	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4560881	0.84[ASN][1000 genomes]
rs4636294	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62558566	0.90[ASN][1000 genomes]
rs62559378	0.83[ASN][1000 genomes]
rs6475549	0.84[ASN][1000 genomes]
rs6475550	0.84[ASN][1000 genomes]
rs6475551	0.82[ASN][1000 genomes]
rs6475552	0.84[ASN][1000 genomes]
rs6475555	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475564	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6475566	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475568	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475569	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475571	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6475572	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6475574	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6475576	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6475578	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6475579	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7019601	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7021012	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7021538	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7023299	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7024027	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7028913	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029040	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029166	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029274	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036249	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7036257	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7037577	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7039487	0.86[ASN][1000 genomes]
rs7043827	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045768	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7047136	0.84[ASN][1000 genomes]
rs751173	0.85[ASN][1000 genomes]
rs7848524	0.84[ASN][1000 genomes]
rs7850446	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7852710	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7852900	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7853131	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854018	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7854222	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7855242	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856941	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7857636	0.84[ASN][1000 genomes]
rs7858959	0.84[ASN][1000 genomes]
rs7858991	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7860576	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866540	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7866787	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7866885	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7867994	0.80[ASN][1000 genomes]
rs7871345	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7874319	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9298821	0.83[ASN][1000 genomes]
rs9298822	0.83[ASN][1000 genomes]
rs9298823	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298824	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298825	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs950770	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9644821	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9644858	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9886831	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv471290	chr9:21694038-21721939	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892744	chr9:21694039-21746419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1837210	chr9:21700795-21729895	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21712200-21717800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links