Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114245404..114247050-chr6:114257161..114258727,2	K562	blood:
2	chr6:114245318..114247054-chr6:114255867..114258727,3	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11758632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17792118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2475623	1.00[CHB][hapmap]
rs2475624	1.00[CHB][hapmap]
rs2499612	1.00[CHB][hapmap]
rs35598148	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62415872	0.87[ASN][1000 genomes]
rs62415876	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62415904	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415906	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415909	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62415914	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62415915	0.87[ASN][1000 genomes]
rs62415916	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62415923	0.87[ASN][1000 genomes]
rs73548638	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7744487	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9488293	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9488294	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv830779	chr6:114206534-114246099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114226600-114246000	Weak transcription	Fetal Stomach	stomach
2	chr6:114242400-114245600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:114242400-114245800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:114242400-114265400	Weak transcription	Thymus	Thymus
5	chr6:114242600-114245800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:114242600-114261000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:114242800-114245600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:114242800-114245600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:114242800-114245800	Weak transcription	Right Atrium	heart
10	chr6:114242800-114250400	Weak transcription	Left Ventricle	heart
11	chr6:114242800-114260200	Weak transcription	HepG2	liver
12	chr6:114243000-114248200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:114244400-114245800	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:114244400-114245800	Weak transcription	K562	blood
15	chr6:114244800-114246000	Enhancers	Fetal Lung	lung
16	chr6:114245400-114246000	Enhancers	HUVEC	blood vessel

Quick Search: