Variant report

Variant	rs62415923
Chromosome Location	chr6:114301596-114301597
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11758632	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17792118	1.00[ASN][1000 genomes]
rs2169506	0.87[ASN][1000 genomes]
rs62415872	0.84[EUR][1000 genomes]
rs62415876	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62415904	0.87[ASN][1000 genomes]
rs62415906	0.87[ASN][1000 genomes]
rs62415909	1.00[ASN][1000 genomes]
rs62415914	1.00[ASN][1000 genomes]
rs62415915	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415916	0.88[ASN][1000 genomes]
rs73548638	1.00[ASN][1000 genomes]
rs7744487	1.00[ASN][1000 genomes]
rs7748936	1.00[ASN][1000 genomes]
rs9488293	1.00[ASN][1000 genomes]
rs9488294	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv520419	chr6:114285253-114306614	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114296400-114302200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:114300400-114302600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:114300600-114302400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:114300800-114301600	Enhancers	Primary B cells from cord blood	blood
5	chr6:114301000-114301600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:114301000-114301600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:114301000-114301600	Enhancers	GM12878-XiMat	blood
8	chr6:114301000-114301800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:114301000-114301800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:114301000-114302000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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